Installation

MATLAB

• From GitHub or RMDB, download the zip or tar file of the repository and unpack; or

git clone https://github.com/ribokit/RDATKit.git

• In MATLAB, go to “Set Path”. Then “Add with Subfolders” of the target path/to/RDATKit/MATLAB/.

Python

To install RDATKit, simply:

• Copy path.py.example into rdatkit/path.py. Edit rdatkit/path.py following the instructions in the file to point to local installations of RNAstructure, ViennaRNA, and VARNA.

• Run:

cd path/to/RDATKit/
python setup.py install

For system-wide installation, you must have permissions and use with sudo.

RDATKit requires the following Python packages as dependencies, all of which can be installed through pip.

numpy >= 1.8.0
scipy >= 0.13.0
xlrd >= 0.9.2
xlwt >= 1.0.0